Graduate Student Workshop on Diffusion Weighted MRI imaging and data processing

Arun Venkatarman, Zachary Christiensen, Alan Finkelstein

Organized By: Madalina Tivarus & Lars Ross

• DIPY : Data reconstruction (DTI, DKI, IVIM, Tractography) .
• FSL: Eddy correction (EDDY), Susceptibility correction (TOPUP), DTI, Tractography FSL Diffusion Practical
• MRtrix3 : Reconstruction (CSD) + FBA, Tractrography + SC.
• Brain Connecitivty Toolbox: Graph Theory analysis of SC (FC).
• Camino : Data Reconstruction + Synthesis + Tractography.

1. Alzheimer's Disease Neuroimaging Initiative (ADNI)
2. Human Connectome Project (HCP)
3. OpenNeuro
4. Adolescent Brain Cognitive Development (ABCD) Study
5. Parkinson's Progression Markers Initiative (PPMI)

1. DTI Review - O'Donnell et al. 2012
2. NODDI -Zhang et al., 2012
3. Major White Matter Tracks - Bullock et al. 2022