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chiton

Chiton provides a Python wrapper to commonly used bioinformatics programs.

cytos

dash-component-boilerplate

Get started creating your own Dash components here.

ezaai

EzAAI - High Throughput Prokaryotic AAI Calculator

fastani

Wrapper for FastANI.

gunc

Python package for detection of chimerism and contamination in prokaryotic genomes.

impact-of-contamination-on-taxonomy

indizio

A visual analytics tool to investigate correlated data structures using heatmaps, networks, and network statistics.

java-avl-tree

An implementation of an AVL Tree (self-balancing binary search tree) in Java.

lpsn-extract-genus-names

Parses the LPSN genus names of latin origin and outputs a table.

m.chuvochina-16s-tree-vs-gtdb

magna

A collection of bioinformatic datasets and utilities I use in my everyday life.

metatree

Visualisation of polyphyletic groups between phylogenetic trees to a reference tree.

phylodm

Efficient calculation of phylogenetic distance matrices.

prole

rpi5-octoprint

Automatic configuration of Octoprint on a RPi 5.

rq-dashboard-api

A bespoke version of RQ dashboard that is hyper-specific to my use case.

rq-dashboard-web

rq-sentinel-api

rq-sentinel-web

rsrq

A minimal Redis-backed job queue.

sarand

To extract AMR genes and their neighborhood

test-action

test-action2

vtracker

For tracking the relationship between group membership changes across versions.