GithubHelp home page GithubHelp logo

aaronmussig / metatree Goto Github PK

View Code? Open in Web Editor NEW
2.0 0.0 0.0 181 KB

Visualisation of polyphyletic groups between phylogenetic trees to a reference tree.

License: GNU General Public License v3.0

Python 100.00%

metatree's Introduction

metatree

PyPI Conda (channel only) DOI

Visualisation of polyphyletic groups between phylogenetic trees to a given reference tree.

Installation

  • PyPI: pip install metatree
  • conda: conda install -c bioconda metatree

Usage

NOTE: The reference tree must always be the first line in the batchfile.

metatree [batchfile] [out_dir] [taxonomy_file] [outgroup] [cpus]

See the example directory for an example on how to use metatree.

Changelog

0.0.1
  - Initial release.

Citing

Please cite this repository if you use it in your work.

metatree's People

Contributors

aaronmussig avatar

Stargazers

Dana Bauer avatar Jie Zhu avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.