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hse21_hw3

Ссылка на 1 часть: https://colab.research.google.com/drive/19O6sdnHVjBC3Na8NeyeZcbh2u3kbPYWp?usp=sharing

Ссылка на часть с R: https://colab.research.google.com/drive/10X7_12S413H2nZDPFoVMVzVTeMGlzM3Q?usp=sharing

Я заметил, что я перепутал колонки в ALL.counts, поэтому я написал скрипт на питоне который все правит (main.py в папке data/).

Отчет fastq лежит в multiqc_report.html.

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HISAT:

hs

Уникальные чтения:

u

HTSEQ:

ht

Общее число чтений:

SRR3414629_1: 16049609
SRR3414630_1: 11465320
SRR3414631_1: 18408844
SRR3414635_1: 16275994
SRR3414636_1: 15757574
SRR3414637_1: 15736976

Графики DESEq2

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Графики для генов которые наиболее значимо поменяли свою экспрессию (55402, 55403, 5409, 265).

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