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Mouse Brain

Segmentation automatique du cerveau de souris à partir d'images IRM via un réseau neuronal U-NET.

Données

La base de données initiale est composée de 16 images 3d labellisées de cerveaux de souris.

Nous l'augmentons en effectuant des symétries et rotation aléatoires.

Environnement python

python -m venv venv
source venv/bin/activate
pip install -r requirements.txt

Entrainement du modèle

python src/train.py

Le modèle est sauvegardé dans le fichier models/unet3d-xxxxxx.h5

Evaluation du modèle

python src/test.py

Résultats

Entrainement sur 15 epochs avec 128 données d'entrainements, et un batchsize de 4.

Modèle: models/unet3d-15812270355.h5

History: models/unet3d-15812270355-history.csv

History

Pour regénérer la courbe, utiliser le script python src/plot.py.

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