This R package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region. Tested on ChIP-Seq peaks and nucleosome positions.

datasharing

The Leek group guide to data sharing

docker-arcashla

Docker image for arcasHLA software

enrichviewnet

From functional enrichment results to biological networks

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

geneiase_tools

R scripts to process input/output related to GeneiASE software

gettingandcleaningdata

Getting and Cleaning Data Project

hla

xHLA: Fast and accurate HLA typing from short read sequence data

hlaclustrview

R package specialized in HLA typing clustering and visualization based on specific similarity metrics.

learningslidify

This repo is mainly for leaning slidify from cousera course Data Science

machinelearningweightlifting

Qualitative Activity Recognition of Barbell Lifting Exercises

methinheritsim

Bioconductor Package - Whole-Genome Inherited Bisulphite Sequencing Data Simulation

methylinheritance

Bioconductor Package - Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

mpileuptools

This python script parses a mpileup file to extract the coverage of each base at each position.

nucleosim

Bioconductor Package - Simulate synthetic nucleosome maps

nucleosimshiny

Interactive generation of nucleosomes maps using Shiny framework and based on Bioconductor nucleoSim package

organoidstoolbox

Enabling organoid analyses using drug sreening, RNA-seq, exome-seq

pairedpermutationtest

R package to carry out permutation tests on paired observations

raids

Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms

rjmcmcnucleosomes

Bioconductor Package - Genome-Wide Nucleosome Positioning in R with an optimized section in C++

signatureheatmap

R package to create heatmaps using signature gene list and transcriptomic data

similarpeak

Bioconductor Package - Metrics to estimate the level of similarity between two ChIP-Seq profiles

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