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adeschen avatar adeschen commented on September 27, 2024

Hi Wang,

Was Cytoscape open when you ran your code? "Unable to connect to Cytoscape. CX JSON file will be created." is the message that is printed when the gprofiler2cytoscape cannot connect to an open session of Cytoscape. If you find a CX JSON file in your directory, you can open Cytoscape and load it; it should load correctly. Otherwise, try again with Cytoscape open.

I hope that this will work. This software is this in a 'beta' version and has not been heavily tested. If you have other problems/questions/suggestions, don't hesitate to create an issue.

Best Regards,
Astrid

from enrichviewnet.

yungsiyebu avatar yungsiyebu commented on September 27, 2024

Dear author,
Thank for your help! I fixed the problem, it works, when I run gprofiler2cytoscape after Cytoscape was open firstly!
Best regards
Wang

from enrichviewnet.

adeschen avatar adeschen commented on September 27, 2024

Good news. I am closing the issue.

Best,
Astrid

from enrichviewnet.

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