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sbas_test

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

single-cell-rna-seq-data-analysis-2018

Event page: https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018

six_frame_translation

Six frame translation - as a container attribution Long-Read-Proteogenomics/modules/six_frame_translation

sleuth

Differential analysis of RNA-Seq

slide-carousel-simple

simple slide carousel / photo viewer

splicing-nf-container

Container for tools needed for the nextflow splicing-pipeline-nf

splicing-pipelines-nf

Repository for the Anczukow-Lab splicing pipeline

sqanti3-docker

A docker image to run SQANTI3

star-docker

staries

The *ies. A series of <star>-ies util snippets, scripts or templates that I use day to day.

tissue-innate-immunity

transcriptome-summary-docker

This is the container for transcriptome_summary.py used slightly modified from Long Read Proteogenomics Workflow

trimgalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

trimgalore-docker

trimmomatic

Trimmomatic

trimmomatic-docker

Docker Container for trimmomatic

university

Educational materials for the St. Jude Cloud project.

wellstein-docker

minimal star-docker container

wgbs_tools

tools for working with WGBS data while preserving reads intrinsic dependencies

wgcna-docker

wgcna-docker