stjudecab.github.io's Introduction

St. Jude Center for Applied Bioinformatics(CAB)

Our website is based on jekyll

The open source templates were forked from Dr. Stephan Sanders,
Earlier version designed and shared by the labs of Dr. Allan Drummond and Trevor Bedford
Full Publication list using al-folio adapt from Maruan Al-Shedivat based on jekyll plugin jekyll-scholar
We greatful thank them for sharing code and knowledge.
We added plugin jekyll-spaceship to improve table shown by markdown.
Check script/README.md for more customization

If you use conda, these will help you start build for your own

Step1: Fork https://github.com/stjudecab/stjudecab.github.io
Step2: on you forked git, click setting and get your own repository name
Step3: Under linux

git clone https://github.com/**yourid**/stjudecab.github.io
#conda create -n iobuild python=3.8 ruby=2.6.3
#conda activate iobuild
conda env create -f .condaenv.yml -n iobuild
export CONDA_BUILD=1
conda activate iobuild
gem install bundle
bundle install
#local debug, would rebuild automatically everytime you changed a file
yourip=$(hostname -I | awk '{printf $1}')
bundle exec jekyll serve --host $yourip --port 5050 --livereload
#after confirmation of the changes you want
bundle exec jekyll build
git commit "update" && git push
sh script/deploy
#Note it might take a few minutes for github.io to update, be patient

The website is deployed using GitHub Pages and the source code is available on GitHub. Please feel free to reuse this code (making sure to cite the Maruan, Sanders, Bedford and Drummond lab as the original sources of the lab website template).

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