ahmedelsherbini,Ahmed M. A. Elsherbini,Ah_M_Elsherbini,github

👋 Hi, I’m @AhmedElsherbini
👀 I’m interested in Bacterial, Viral genomics and Microbiome data analysis
🌱 I’m just learning and trying to improve my skills in bioinformatics , machine learning and in wet-lab work :))
📫 How to reach me? I'm a fast responder, just mail me.Looking forward to talking with you :))

Ahmed M. A. Elsherbini's Projects

ahmedelsherbini

Config files for my GitHub profile.

bakta_stats

Condense and summarize many results form BAKTA into CSV for statistics

cblaster_stats

Parse binary files from Cblaster into more useful information

code-for-rvd-et-al.-2023

Secretory IgA impacts the microbiota density in the human nose

code_for_elsherbini_et_al_2023

Utilizing genomic signatures to gain insights into the dynamics of SARS-CoV-2 through Machine and Deep Learning techniques

download_hmp_data

Download Human microbiome project (WGS) data from hmpdacc.org via https

hts_insilico_pcr

High throughput In-silico PCR

isescan_stats

Condense and summarize many results form ISEScan into CSV for heatmaps

microbeannotator_stats

Condense and summarize MicrobeAnnotator metabolic pathway tab files from many genomes into a big heatmap CSV files

nasal_cst_quick_checker

Quickly check community state type from nasal microbiome data

padloc_stats

Condense and summarize many results form PADLOC into CSV for heatmaps

prokaryotic_assembly_annotate

For bacterial genomes assembly and annotate

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Ahmed M. A. Elsherbini's Projects

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