ajitjohnson Goto Github PK
Name: Ajit Johnson Nirmal
Type: User
Company: Harvard University
Bio: Cancer Geneticist | Data Scientist
Twitter: ajitjohnson_n
Location: Boston, USA
Ajit Johnson Nirmal's Projects
ajitjohnson.github.io
Blogging site run with jekyll
arseq
An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
detectron
FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.
imaap
Annotation and Analysis of Multiplexed Imaging Data
imsig
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
jupyter-notebooks
A collation of my various projects at Dana-Farber cancer institute and Harvard medical school
mcmicro
Multiple Choice Microscopy
mcmicro-nf
Nextflow prototype for mcmicro
mipy
Image Analysis Work Flow
ml-for-beginners
12 weeks, 24 lessons, classic Machine Learning for all
oneliners
Useful bash one-liners for bioinformatics.
python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
pythonscripts
A cumulation of different project scripts
pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
rscripts
A collection of R scripts used during my PhD
scimap_tutorials
Tutorial contents for using scimap.xyz
single_cell_intestine
R code for single-cell analysis of intestinal epithelial cells
uxdigi
:sparkles: Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
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