GithubHelp home page GithubHelp logo

I work on statistical models and their applications for biomedical data. At the moment I am working on Bayesian modelling of eQTLs using allele specific expression in celltype-specific studies of immune-mediated diseases. Previously I worked on quantifying expression heterogeneity in single cell RNAseq data using a Bayesian approach.

I maintain some R packages:

I currently maintain two parts of the Bioconductor book ecosystem:

Book/Chapter Devel Release Issues Pull requests
OSCA devel release GitHub issues GitHub pulls
OSCA.multisample devel release GitHub issues GitHub pulls

I also contribute to:

  • CRAN packages:
  • Bioc:
    Package Devel Release Issues Pull requests
    BASiCS GitHub issues GitHub pulls

Some other stuff:

Alan O'Callaghan's Projects

age icon age

R code for making plots about age of empires

agitated icon agitated

An UpSetR clone to soothe my agitated heart

aicsimageio icon aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

aoecps icon aoecps

AOE2 Civilisation Performance Statistics

baseqtl icon baseqtl

github mirror of the gitlab repo to test some CI questions

basics icon basics

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

basicstan icon basicstan

Stan implementation of BASiCS: https://github.com/catavallejos/BASiCS/

bayefdr icon bayefdr

Bayesian estimation and optimisation of expected FDR and expected FNR

densvis icon densvis

R package implementing the density-preserving data visualization tools den-SNE and densMAP

fileserver icon fileserver

Simple rails fileserver for static content, with a reverse proxy for php scripts

ggplot2 icon ggplot2

An implementation of the Grammar of Graphics in R

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.