albertopessia / kpax2 Goto Github PK

i am trying to see whether the lineages i am getting when i do my Maximum likelihood phylogenetic analysis are true lineages or sub-lineages within a known lineage. Someone advised me to use kpax2 but this is my first time and i have tried reading broadly on it but the agebra behind it is not easy for me to grasp. i found your tutorial but i am getting that error when i try to mirror the code on my dataset. Would u please shade more light on how i can resolve it?

I'm having a problem installing kpax2 with R version 3.3.0 (2016-05-03) -- "Supposedly Educational" & OS X 'El Capitan'. Below is the error:

install.packages("kpax2_1.0.0.zip", repos=NULL, type="source") Installing package into ‘~/Library/R/3.3/library’ (as ‘lib’ is unspecified) Error in rawToChar(block[seq_len(ns)]) : embedded nul in string: 'PK\003\004\n\0\0\0\0\0\xf6\xa4\x8eHϒ\xccrms\0\0ms\0\0\022\0\0\0kpax2_1.0.0.tar.gz\037\x8b\b\0\0\0\0\0\0\006\xed}iw\xdbF\xb2h>\xeb\034\xff\a\x98NFDL\xd1$%\xdbwtC\xcfS\xbcĞx{\x96<N\xa2hr@\022\x92'
Warning message:
In install.packages("kpax2_1.0.0.zip", repos = NULL, type = "source") :
installation of package ‘kpax2_1.0.0.zip’ had non-zero exit status`