This is an implementation of the the mismatch string kernel for protein classification [1] as a team project (with Akash Shrestha) for machine learning course.
[1] Leslie, C. S., Eskin, E., Cohen, A., Weston, J., & Noble, W. S. (2004). Mismatch string kernels for discriminative protein classification. Bioinformatics, 20(4), 467-476.