alihashmiii / bond-orientational-order

determine local crystalline domains in agglomerates

𐌀li ℍashmi, ℙh.𝔻.

I have a PhD in biophysics. I am primarily interested in the mathematical/computational and experimental approaches for exploring the physical basis of biological development. I am broadly interested in scientific programming, symbolic computing, image processing/computer vision and machine learning!

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Following are the examples of some codes/scripts I have developed:

❂ 3D Vertex Model: A Mathematica code for simulating biological tissues in 3D ❂ 2D Vertex Model: Simulate biological tissues in 2D ❂ Force Inference: Infer forces from an epithelial tissue ❂ Nematic Defect: compute nematic defects from phase contrast images of tissues ❂ UNET segmentation: The first UNET implementation in Mathematica/Wolfram Language ❂ Elliptic Fourier Descriptor: Elliptic Fourier Descriptors for describing shapes ❂ CurvatureMeasure: Determine curvature of objects ❂ SMtrack and Lineage-Mapper: Track single molecules and cells respectively

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