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Hi there 👋

I'm a scientist and engineer working in the field of genomics.

I'm very fortunate to work with a wonderful community of scientists from around the world to study the mosquitoes that transmit malaria. Together we are building shared genomic datasets and using them to monitor mosquito populations and learn about how they are evolving in response to malaria control interventions.

I also love code and the transformative power of open source software to empower scientists and build bridges between people and data. I've contributed to various open source software projects and am a big fan of the Python scientific computing ecosystem and community.

If you're into using big data, code and computing technology to level the playing field for folks tackling the hard problems in improving human health, please reach out, I'd love to meet you!

Alistair Miles's Projects

hmmcnv icon hmmcnv

Examples and utilities for calling copy number variations (CNVs) from high throughput sequence data using a hidden Markov model (HMM)

intake icon intake

Intake is a lightweight package for finding, investigating, loading and disseminating data.

jupyter-book icon jupyter-book

Create beautiful, publication-quality books and documents from computational content.

malariagen-binder icon malariagen-binder

Repository with installation scripts and environment definitions for conda and texlive, for standardising environments across the MalariaGEN resource centre team.

malvecbib icon malvecbib

A bibtex bibliography for all things related to malaria vector biology and genomics.

meta icon meta

Planning and Collaborative Space for Executable Book Project

numcodecs icon numcodecs

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

numpydoc_decorator icon numpydoc_decorator

Build numpy-style docstrings programmatically and apply them using a decorator.

octopus icon octopus

Bayesian haplotype-based mutation calling

pomegranate icon pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

pysamstats icon pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

pyvcf icon pyvcf

A Variant Call Format reader for Python.

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