alipirani88 / nanosake Goto Github PK
View Code? Open in Web Editor NEWA Snakemake workflow to basecall, quality control and assemble Nanopore data.
A Snakemake workflow to basecall, quality control and assemble Nanopore data.
@dhatribadri quast stopped working after singularity integration. Could you check how to correctly call quast executable from singularity image?
FATAL: While making image from oci registry: error fetching image to cache: while building SIF from layers: while creating SIF: while unloading container: close /home/apirani/.singularity/cache/oci-tmp/tmp_748027087: no space left on device
If you get the above singularity error, set your singularity cache directory to someplace with enough available space.
Solution:
export SINGULARITY_CACHEDIR=/nfs/turbo/umms-esnitkin/Project_KPC_LTACH/Analysis/LTACH_Transmission_Clusters/2024_04_23_plasmidsaurus_data_Nanosake/Nanosake
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