bioinfo-training-philippines
Bioinformatics Analysis Course for SARS-CoV-2 and Influenza
Manila, Philippines 15-19 April 2024
| Mon |
Activities |
|
Speaker |
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| 08:30 am |
Registration |
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|
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| 09:00 am |
Welcome Remarks |
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Introduction of participants |
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|
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Overview of training course |
|
Clyde |
|
|
Group photo |
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|
|
| 10:30 am |
Break |
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|
|
| 11:00 am |
Pre-course quiz |
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|
|
| 11:30 am |
Lecture 1 Genomic surveillance of Influenza and SARS-CoV-2 |
|
Clyde |
|
| 12:30 pm |
Lunch |
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|
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| 01:30 pm |
Lecture 2 NGS data analysis |
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|
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| 02:00 pm |
Lecture 3 Quality control of NGS data |
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| 02:30 pm |
Break |
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| 03:00 pm |
Hands-on Quality control with FastQC |
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|
|
| 05:00 pm |
Wrap up |
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| Tue |
Activities |
|
Speaker |
|
| 09:00 am |
Lecture 4 Principles of genome assembly |
|
Ammar |
|
| 09:30 am |
Tutorial Influenza genome assembly with INSaFLU |
|
Ammar |
|
| 10:30 am |
Break |
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|
|
| 11:00 am |
Hands-on Influenza genome assembly with INSaFLU |
|
Ammar |
|
| 12:30 pm |
Lunch |
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|
|
| 01:30 pm |
Lecture 4a Genome assembly with Galaxy |
|
Wytamma |
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| 02:00 pm |
Hands-on SARS-CoV-2 genome assembly with Galaxy |
|
Wytamma |
|
| 03:00 pm |
Break |
|
|
|
| 03:30 pm |
Hands-on SARS-CoV-2 genome assembly with Galaxy |
|
Wytamma |
|
| 05:00 pm |
Wrap up |
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|
|
| Wed |
Activities |
|
Speaker |
|
| 09:00 am |
Lecture 5 QC on consensus sequences generated |
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|
| 10:30 am |
Break |
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| 11:00 am |
Hands-on QC on consensus sequences generated |
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| 12:30 pm |
Lunch |
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|
| 01:00 pm |
Lecture 6 Online tools (Nextstrain, Nextclade) |
|
Ammar |
|
| 01:30 pm |
Hands-on Online tools (Nextstrain, Nextclade) |
|
Ammar |
|
| 02:30 pm |
Break |
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|
|
| 03:30 pm |
Lecture 7 Online tools (FluSurver, CoVsurver) |
|
Clyde |
|
| 04:00 pm |
Hands-on Online tools (FluSurver, CovSurver) |
|
Clyde |
|
| 05:00 pm |
Wrap up |
|
|
|
| Thu |
Activities |
|
Speaker |
|
| 09:00 am |
Lecture 8 Genetic databases (GenBank, GISAID) |
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| 09:30 am |
Hands-on Accessing sequences on GISAID, NCBI |
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|
| 10:00 am |
Break |
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|
| 10:30 am |
Lecture 9 Phylogenetics analysis |
|
Wytamma |
|
| 11:00 am |
|
|
|
|
| 12:30 pm |
Lunch |
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|
|
| 01:30 pm |
Hands-on Phylogenetics analysis |
|
Wytamma |
|
| 02:30 pm |
Break |
|
|
|
| 03:00 pm |
Hands-on Phylogenetics analysis |
|
Wytamma |
|
| 05:00 pm |
Wrap up |
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| Fri |
Activities |
|
Speaker |
|
| 09:00 am |
Lecture 10 Uploading sequences to GISAID |
|
Clyde |
|
| 09:30 am |
Hands-on Uploading sequences to GISAID |
|
Clyde |
|
| 10:00 am |
Break |
|
|
|
| 10:30 am |
Case study |
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| 12:30 pm |
Lunch |
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|
| 01:30 pm |
Post-course quiz |
|
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|
| 02:30 pm |
Open forum |
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| 03:30 pm |
Break |
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| 04:00 pm |
Course evaluation |
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| 04:30 pm |
Awarding of certificates |
|
|
|
| 05:00 pm |
Closing remarks |
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