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ABC-Finder i.e., A Docker-based package for the identification of ABC proteins in all organisms, and downstream analysis and visualization of the topology of ABC proteins using an interactive web browser.

License: GNU General Public License v3.0

Python 7.19% HTML 5.41% JavaScript 37.16% CSS 50.15% Dockerfile 0.10%
abc-proteins topology docker-container transmembrane-domains reproducibility nucleotide-binding-domains docker-

abcfinder's People

Contributors

andrewmlynn avatar naveen584 avatar

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abcfinder's Issues

Installations errors

Unfortunately, commands "docker-compose build" and "docker-compose up -d" do not install software. "docker-compose build" returns messages "Building wheel for pandas (setup.py): finished with status 'error'" and "Building wheel for scipy (pyproject.toml): finished with status 'error'". When I used the second command "docker-compose up -d" I got:
Failed to build pandas scipy
ERROR: Could not build wheels for scipy, which is required to install pyproject.toml-based projects
ERROR: Service 'web' failed to build: The command '/bin/sh -c . /opt/conda/etc/profile.d/conda.sh && conda activate base && conda install -c plotly -y plotly plotly-orca && conda install -c conda-forge -y firefox kombu biopython zipp selenium matplotlib kiwisolver flower django-widget-tweaks zip poppler geckodriver celery && conda install -c anaconda pip redis six psutil scipy requests numpy pandas jsonschema psutil psycopg2 django beautifulsoup4 && conda install -c bioconda -y hmmer wkhtmltopdf cd-hit && pip install django==2.2.7 redis imgkit pdfkit six django-chartjs && apt-get update && apt-get install -y python3-pip && pip3 install -r requirements.txt && conda clean -y --all' returned a non-zero code: 1

And http://abc-finder.osdd.jnu.ac.in/ seemly deos not work:(

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