angione-lab / synechococcus7002-metabolic-modelling Goto Github PK

Hello, This is SiYeon Ju.
I was impressed with your article. and now, I'm studying with your code.
As below, some code into "evalutate_objective_minNorm.m" represent the Equation 2 in the article?

good luck!

[evalutate_objective_minNorm.m]
...
gamma = 3.5.*ones(1,length(reaction_expression)); %vary gamma by 3.5.*ones

for i=1:length(num_reaction_expression) %loop over the array of the geneset expressions
fbamodel.lb(i) = fbamodel.lb(i)(num_reaction_expression(i)^gamma(i));
fbamodel.ub(i) = fbamodel.ub(i)(num_reaction_expression(i)^gamma(i));
end
...