antgonza Goto Github PK

american-gut

American Gut open-access data and IPython notebooks

american-gut-analyses

american-gut-web

The website for the American Gut Project participant portal

bioconda-recipes

Conda recipes for the bioconda channel.

biom-format

The Biological Observation Matrix (BIOM) Format Project

biom-format.github.com

bloom-analyses

cards

crossmodel_prediction

deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.

docs

Source repository for https://docs.qiime2.org

emperor

empress

A very fast and scalable phylogenetic visualization viewer

evident

evident-initial-demo

Elucidating sampling effort for microbial analysis studies

ihmp-analyses

ili

A toolbox for molecular mapping in 2D and 3D in Chrome

json.sh

a pipeable JSON parser written in Bash

labadmin

Administration website for the Knight Lab

labman

lab manager for plate maps and sequence flows

mds-approximations

Multidimensional scaling algorithms for microbiology-ecology datasets.

metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing

mg-scripts

Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

msystems00105-16

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

mustached-octo-ironman

Easy dispatched compute via in a Tornado environment

my-microbes

A set of tools for delivering personal microbiome results to individuals participating in microbiome sequencing studies.

oecophylla

shotgun pipeline

platypus

Confirming specific taxonomic groups within your samples.

pycogent

PyCogent: Official repository for software and unit tests