This repository contain all code and analysis required to reproduce all the results in the manuscript Inferring clonal somatic mutations directed by X chromosome inactivation status in single cells. Ilke Demirci*, Anton J.M. Larsson*, Xinsong Chen, Johan Hartman, Rickard Sandberg# and Jonas Frisén#.
Each Jupyter notebook contains the code required to reproduce the figures the notebook is named after. For example, Fig1E_and_Supp_Fig_2.ipynb contains the code to reproduce Figure 2E and Supplementary Figure 2. The resulting PDF files are found in the folder figures
. Data which does not require much space is found in data
. Large files can be downloaded from zenodo at 10.5281/zenodo.7498777.
* These authors contributed equally
# Correspondence: [email protected]; [email protected]