antonjmlarsson / clonal_mutations

Inferring clonal somatic mutations directed by X chromosome inactivation status in single cells

This repository contain all code and analysis required to reproduce all the results in the manuscript Inferring clonal somatic mutations directed by X chromosome inactivation status in single cells. Ilke Demirci^*, Anton J.M. Larsson^*, Xinsong Chen, Johan Hartman, Rickard Sandberg^# and Jonas Frisén^#.

Each Jupyter notebook contains the code required to reproduce the figures the notebook is named after. For example, Fig1E_and_Supp_Fig_2.ipynb contains the code to reproduce Figure 2E and Supplementary Figure 2. The resulting PDF files are found in the folder figures. Data which does not require much space is found in data. Large files can be downloaded from zenodo at 10.5281/zenodo.7498777.

* These authors contributed equally

# Correspondence: [email protected]; [email protected]