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2021-qbiosworkshop

R shiny examples for QBios Workshop May 2021

c19r-app

c19rdata

constructor

tool for creating installers from conda packages

covid19-event-risk-planner

COVID19 risk planner R-Shiny application

covid_shield_immunity

Modeling the Role of ‘Shield Immunity’ in Reducing COVID-19 Epidemic Spread

covidoncampus-api-bridge

Serverless API bridge

el_gato

gatech-weitz-sheildimmunity-frontend

Bootstrap frontend for shieldimmunity.org

gatech-weitz-shieldimmunity

Weitz Sheild Immunity dashboard components

genecaller

A stringMLST-based approach to gene calling and annotation

hope

Assessment of homopolymer performance of ONT sequencing

magemodel_covid19_ga

Metapopulation AGe-structured Epidemiological (MAGE) model for COVID-19 in Georgia

mycetomatis_analysis_workflow

Collection of scripts describing how Mycetomatis datasets were processed

pima

Plasmid and antimicrobial resistance pipeline

pima-docker

Seperating the Docker Installation and codebase from the core pima codebase. This way the latest version is always created with the latest docker

pima-docker2

Volume based Pima Docker

pima_md

This implementation of PIMA uses Markdown instead of tectonic. Operation is largely the same though the packages used slightly different.

urdo-candy

CANDy, the Custom AmplicoN Database tool, allows users to create custom BLAST databases using amplicons created with in silico PCR

urdo-smored

Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.