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View Code? Open in Web Editor NEWPlasmid and antimicrobial resistance pipeline
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Can't run script as FASTA files aren't in the repo
https://github.com/abconley/pima/blob/master/pima.py#L24-L27
can you add these data files to the repo?
or a script which downloads/generates them?
Conda env
Thanks for posting this. I learned a lot by seeing how you wrote this pipeline.
If convenient, would you add the conda env file to this project? Seeing the dependencies and configurations will make it a little easier to follow and emulate.
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