Comments (2)
chantisakee
commented on September 4, 2024
I do actually found how to create primer scheme for our own pipeline in document.
:] thanks
from artic-ncov2019.
deearahman
commented on September 4, 2024
I do actually found how to create primer scheme for our own pipeline in document.
:] thanks
Hi,
Do you mind sharing how this is sorted out? I am trying out V4 but not sure how to set up for the artic analysis.
Thanks
from artic-ncov2019.
Related Issues (20)
- Conda environment dependency issues with new versions of Medaka
- nanopolish index -s failure / prime scheme download failure
- could not find primer scheme and reference sequence, attempting to download
- SARS-CoV-2
- artic_vcf_filter fails
- Installation via conda (different ways) failed HOT 1
- Artic enviroment does not install after 7 days HOT 2
- V4.1 scheme and primer BED file HOT 3
- Medaka failed: Command failed:longshot -P 0 -F -A --no_haps HOT 1
- multiple references in V4.1 refereces.fasta -> "FASTA has more than one sequence"
- Nanopolish error HOT 3
- Changing Minimum Sequencing Depth Parameter in artic-ncov2019 HOT 1
- Installing ARTIC stuck at Solving environment HOT 1
- artic assembly - Command failed:muscle -in & -out HOT 2
- Midnight primers scheme
- Update to V4/V4.1 under primer-schemes but not artic-ncov2019
- Error running artic minion
- align_trim ValueError: min() arg is an empty sequence (artic 1.2.1) HOT 1
- Error running nanopolish
- Help with vcf_merge HOT 1
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from artic-ncov2019.