Comments (2)
matthdsm
commented on June 3, 2024
1
Awesome, works for me 😄
Thanks, looking forward to the next version!
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lukfor
commented on June 3, 2024
Hi!
First of all, thank you for maintaining the bioconda recipe! 🙏
We are currently working on snapshot testing (similar to https://jestjs.io/docs/snapshot-testing). A snapshot contains the content of a channel and the checksum for files. The first time this test is run, nf-test creates a snapshot file. The features is already implemented, but we need some more testing. However, it is the next feature we are planing to deploy. You could find more information and examples here:
https://github.com/askimed/nf-test/blob/features/snapshots/docs/assertions/snapshots.md
The snapshot file itself is a json file, an example is here:
https://github.com/askimed/nf-test/blob/features/snapshots/test-data/process/path-util/test_process.nf.test.snap
This could be an alternative to auto generated assertions.
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Related Issues (20)
- [feature] exclude tests by tag
- Weird behaviour when Gzipped files are empty HOT 4
- [Docs] Broken link for navigating to getting started HOT 1
- Automatic staging of `assets` `bin` and `lib` folders broken HOT 1
- Repeated 'permission denied' when running `nf-test clean` or `rm -rf .nf-test` HOT 2
- Add --target option to nf-test list HOT 2
- is there a way we can allow for deliberate snapshot matching? HOT 3
- Only run tests for changed files HOT 3
- Test file not created for workflow when workflow.onComplete is in main.nf HOT 1
- Can snapshots entries be made unique by `test-name + id` instead of just the `id` ?
- Problem when pipeline param is the same as nf-test param
- Broken link HOT 1
- bug: When an input is passed to output with no modification it causes the snapshot to have the absolute path HOT 1
- Access to output channels of unnamed/implicit workflow
- Keyword Arguments
- Allow capture and assertion of `.command.{err,out,log}`
- Conda environment reuse HOT 1
- Need the ability to skip md5 check for some files in snapshot HOT 1
- All tests' meta/output/work directories are deleted and recreated unnecessarily
- Caching of setup fixtures' results HOT 1
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