aspirincode / tarmet

An R package and Shiny App for MS-Based Targeted Metabolic Analyses

TarMet

TarMet is a shiny application for targeted metabolic analyses based on mass spectrometry.

Note

The source code roll back to v1.1.1 version, which is identical to the latest release version. The support of DIA dataset is removed. New package for DIA-MS is developping. Pay close attention to TarSWATH.

Known bug

1. Show error massage when re-input some parameters, but not affect the result.

In the future

1. Allow run in command line.
2. Allow multi isotope tracer, like 13C and 15N.

Installation

Released version

Download the source package at url and install the package locally.

Development version

install.packages(c("rcdk", "tidyr", "devtools", "data.table", "enviPat", "Matrix", "shiny", "plotly"))
source("https://bioconductor.org/biocLite.R")
biocLite(c("MassSpecWavelet", "mzR"))

library(devtools)
install_github("hcji/TarMet")

Usage:

library(TarMet)
runTarMet()

A user guide is included in the package, Here is a gif of how to use the software.

Contact

For any questions, please contact: [email protected]