atrisovic / dataverse-r-study Goto Github PK
View Code? Open in Web Editor NEWData and code for a large-scale study on research code quality and execution at Harvard Dataverse.
License: MIT License
Data and code for a large-scale study on research code quality and execution at Harvard Dataverse.
License: MIT License
git clone https://github.com/atrisovic/dataverse-r-study
cd dataverse-r-study/
pip2.7 install -r requirements.txt
Downloading ipykernel-4.10.1-py2-none-any.whl (109 kB)
|################################| 109 kB 21.0 MB/s
ERROR: Could not find a version that satisfies the requirement ipython==7.16.3 (from -r requirements.txt (line 25)) (from versions: 0.10, 0.10.1, 0.10.2, 0.11, 0.12, 0.12.1, 0.13, 0.13.1, 0.13.2, 1.0.0, 1.1.0, 1.2.0, 1.2.1, 2.0.0, 2.1.0, 2.2.0, 2.3.0, 2.3.1, 2.4.0, 2.4.1, 3.0.0, 3.1.0, 3.2.0, 3.2.1, 3.2.2, 3.2.3, 4.0.0b1, 4.0.0, 4.0.1, 4.0.2, 4.0.3, 4.1.0rc1, 4.1.0rc2, 4.1.0, 4.1.1, 4.1.2, 4.2.0, 4.2.1, 5.0.0b1, 5.0.0b2, 5.0.0b3, 5.0.0b4, 5.0.0rc1, 5.0.0, 5.1.0, 5.2.0, 5.2.1, 5.2.2, 5.3.0, 5.4.0, 5.4.1, 5.5.0, 5.6.0, 5.7.0, 5.8.0, 5.9.0, 5.10.0)
ERROR: No matching distribution found for ipython==7.16.3 (from -r requirements.txt (line 25))
Excellent work 😄
Comments and questions, I hope you don't mind me misusing the repo for that. Happy to take the conversation elsewhere if you prefer (email?).
(Might add more questions as I digest... again, cool work!)
Replication package = dataset = data & code
Because they do not stop on errors, that is why they are "best performing". You are basically ignoring errors:
{ require("foobar") ; install.packages(tempfile()); message("\nNOT GOOD!!!\n") }
See how "NOT GOOD" is printed here:
Loading required package: foobar
Installing package into ‘/Users/gaborcsardi/Library/R/arm64/4.2/library’
(as ‘lib’ is unspecified)
NOT GOOD!!!
Warning messages:
1: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘foobar’
2: package ‘/var/folders/ph/fpcmzfd16rgbbk8mxvy9m2_h0000gn/T//Rtmph0Pd7A/file12c3c78c562f5’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
OTOH you could argue that if the script finishes anyway, then those packages were not really needed in the first place....
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