Compiling TF large model with Neuron fails on protobuf size limit about aws-neuron-sdk

[mrnikwaws]

Thanks for raising the issue. We’re going to take a look at the broader issue soon. I'm checking with the team to see if there are any work-arounds in the meantime to allow you to compile large models

[mrnikwaws]

Hi shepsels,

Thanks for your question. Your problem is related to the 2GB protobuf limit. The team are looking at several improvements, and we'll provide more updates once we've worked through those ideas.

For now here is some code shared by a colleague on how to split compilation of the model where embeddings are used. This won't help in every situation, but it might give you some options with your existing models which exceed 2GB.

The key reusable part is tf.import_graph_def which allows graph surgery by modifying the inputs to a graph. We’ve omitted training parameters and parameter loading code in this example to keep it brief.

We can likely provide some additional advice if you are still stuck and can share the code you are trying to compile.

Problem code:

# show_protobuf_size_limit.py
import tensorflow as tf


dataset_size = 65536
embedding_size = 8192
hidden_size = 1024
num_classes = 2
batch_size = 1

with tf.Session(graph=tf.Graph()) as sess:
    index = tf.placeholder(tf.int32, [batch_size])
    huge_embedding_table = tf.get_variable('huge_embedding_table', [dataset_size, embedding_size])
    embedding = tf.gather(huge_embedding_table, index, axis=0)
    hidden = tf.keras.layers.Dense(hidden_size, activation='relu')(embedding)
    probabilities = tf.keras.layers.Dense(num_classes, activation='softmax')(hidden)
    sess.run(tf.global_variables_initializer())
    feed_dict = {index: [3]}
    result = sess.run(probabilities, feed_dict)
    print('got result', result)
    graph_def = sess.graph.as_graph_def()

    # the following function call breaks due to tf.GraphDef protobuf message size limit
    frozen_graph_def = tf.graph_util.convert_variables_to_constants(sess, graph_def, [probabilities.op.name])

Functional code:

# workaround_protobuf_size_limit.py
import shutil
import numpy as np
import tensorflow as tf
from tensorflow.python.saved_model import tag_constants, signature_constants
import tensorflow.neuron as tfn


# some hyperparameters
dataset_size = 65536
embedding_size = 8192
hidden_size = 1024
num_classes = 2
batch_size = 1

# implement a model that skips the huge embedding table first
model_dir = './saved_model'
neuron_model_dir = './neuron_saved_model'
full_neuron_model_dir = './full_neuron_saved_model'
with tf.Session(graph=tf.Graph()) as sess:
    embedding = tf.placeholder(tf.float32, [batch_size, embedding_size])
    hidden = tf.keras.layers.Dense(hidden_size, activation='relu')(embedding)
    probabilities = tf.keras.layers.Dense(num_classes, activation='softmax')(hidden)
    sess.run(tf.global_variables_initializer())

    # generate a SavedModel
    inputs = {embedding.name: embedding}
    outputs = {probabilities.name: probabilities}
    shutil.rmtree(model_dir, ignore_errors=True)
    tf.saved_model.simple_save(sess, model_dir, inputs, outputs)
    shutil.rmtree(neuron_model_dir, ignore_errors=True)

    # compile SavedModel to Neuron-compatible SavedModel
    tfn.saved_model.compile(model_dir, neuron_model_dir)
    
    # cache some tensor names for later use
    embedding_name = embedding.name
    probabilities_name = probabilities.name

# extract Neuron-compatible GraphDef from Neuron-compatible SavedModel
with tf.Session(graph=tf.Graph()) as sess:
    tags = [tag_constants.SERVING]
    meta_graph = tf.saved_model.loader.load(sess, tags, neuron_model_dir)
    compiled_graph_def = meta_graph.graph_def

# construct the SavedModel
with tf.Session(graph=tf.Graph()) as sess:
    index = tf.placeholder(tf.int32, [batch_size])
    huge_embedding_table = tf.get_variable('huge_embedding_table', [dataset_size, embedding_size])
    embedding = tf.gather(huge_embedding_table, index, axis=0)

    # extend the current tensorflow session/graph with the Neuron-compatible GraphDef
    tf.import_graph_def(compiled_graph_def, name='', input_map={embedding_name: embedding})
    probabilities = sess.graph.get_tensor_by_name(probabilities_name)
    sess.run(tf.global_variables_initializer())

    # run an inference to verify
    feed_dict = {index: [3]}
    result = sess.run(probabilities, feed_dict)

    # save the full SavedModel
    inputs = {index.name: index}
    outputs = {probabilities.name: probabilities}
    shutil.rmtree(model_dir, ignore_errors=True)
    tf.saved_model.simple_save(sess, full_neuron_model_dir, inputs, outputs)

[OpUs-Nebula]

Any progress on this? Saw that ONNX had fixed this issue: onnx/tensorflow-onnx#1090

[BugFreeee]

I'm also having the same issue in 2021. Any updates?