baccuslab Goto Github PK

adaptation-in-parallel-pathways

Data for Ozuysal, Kastner and Baccus, Adaptive feature detection from differential processing in parallel retinal pathways, PLOS Comp Bio 2018

baccuslab_package

Repo for lab-specific visprotocol configs, protocols

blds

Baccus Lab Data Server

deep-retina

deep-retina is a project to build a convolutional neural network that can predict retinal ganglion cell responses to natural stimuli with high accuracy.

demo_tdr_data

experimental_db

flystim

Visual stimulus generator for neuroscience experiments

gknn-entropy

Generalized k-nearest neighbor entropy estimation

high-density-array-spike-sorting

Spike sorting code for the high density array

igor

useful utilities for dealing with igor files in experiments

imgclass

A project for image classification using many of the same paradigms as torchdeepretina

inferring-hidden-structure-retinal-circuits

Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`

keras

Theano-based Deep Learning library (convnets, recurrent neural networks, and more).

kinetic-model

labpack

Lab-specific stimuli, config, and resources to be used with stimpack

libblds-client

Shared library for interacting the BLDS as a client, C++/Qt and Python implementations.

libdata-source

Shared library for interacting with sources of data, either multielectrode arrays or previously recorded files.

libdatafile

A C++ library for reading and writing HDF5 recording files

lnks

Linear-Nonlinear-Kinetics-Spiking(LNKS) model repository

lnks-nnet

Neural network models for predicting membrane potential and firing rate

mcs-visualization

Streaming visualization :chart_with_upwards_trend: of multi-channel systems (mcs) array data

meactl

MEA controller application

meaview

Application for visualizing data collected from the BLDS.

oatool

Online analysis toolkit in Python

online-analysis

C++ library for running various online analyses

picotui

Lightweight, pure-Python Text User Interface (TUI) widget toolkit with minimal dependencies. Dedicated to the Pycopy project.

plat

Simple functions to measure effects of platinizing the array

pyret

Python tools for analysis of neurophysiology data

recording-software

Super-repository for the lab's custom recording software pipeline.

retina-channel