banzhan / rf-and-pc Goto Github PK
View Code? Open in Web Editor NEWMachine Learning Predicts the Functional Composition of the Protein Corona and the Cellular Recognition of Nanoparticles
Machine Learning Predicts the Functional Composition of the Protein Corona and the Cellular Recognition of Nanoparticles
Rcode.class.factor.selection这个程序中:class.280.save.csv exp.class.csv predict.data.csv
network这个程序中:proximity-class.a.csv
individual prediction这个程序中:individual.data.csv
请问以上的数据分别是什么,如何获取呢
作者您好,我在复现R代码的过程中遇到了和讨论区类似的问题,请问可以麻烦您告知network.R中的proximity-class.a.csv,Rcode.class.factor.selection.R中的exp.class.csv和predict.data.csv分别对应了您的researchgate中SI. Experimental proteins identification.xlsx、SI.Model performance on selected individuals with tenfold validation.xlsx、SI.Experimental verification on selected individual proteins.xlsx中的哪一份文件吗?以及您给出的数据文件是运行之后的结果文件吗?
其余的已经在评论区找到相应回复啦,非常谢谢您的耐心解答,论文也给了我很大启发,再次感谢~
作者您好,请问可以麻烦您通过Research Gate上附件文件的获取申请吗?非常感谢~
作者您好,我正在尝试复现您的工作,但是遇到了如下的一点问题:
1、请问network这个程序中的proximity-class.a.csv,Rcode.class.factor.selection这个程序中的exp.class.csv和predict.data.csv分别对应了您的researchgate中SI. Experimental proteins identification.xlsx、SI.Model performance on selected individuals with tenfold validation.xlsx、SI.Experimental verification on selected individual proteins.xlsx中的哪一个呢?
2、在Rcode.class.factor.selection这个程序中绘制MDS图时,里面的core.color和mo.color分别对应的是什么呢,为何我画图时它是空集?
3、在Rcode.class.factor.selection这个程序中绘制MDS图时,里面的Nanoparticle.core和Modification又是什么呢?我在class.280.save.csv中并没有找到相应的项。
如果您能回复,我将不胜感激!
作者您好,请问您在PANS上公开的653条数据(188列)中,前10列是作为特征输入,后178列是作为随机森林的输出吗?模型每次输出的是一列数据还是178列数据呢?
Hi BanZhan,
thanks a million for this brilliant work, I find it extremely helpful and inspiring.
I'm trying to reproduce your results but I'm having some issues with the code. I'm using the data you have shared in your ResearchGate page, but I'm still having a lot of basic errors (undefined columns selected, returning Null values,...) so I was wondering if there is a specific version of R you recommend. I'm currently running the code in RStudio with R 4.2.3.
Best,
Beatrice
PhD Student, TU Dublin
您好!我在复现您的结论(包括图),请问在network
文件中proximity-class.a.csv
是哪个呀,在您文章的SI中只有一个xlsx,请问可以上传吗?盼复!
作者您好,我在复现R代码的过程中遇到了和讨论区类似的问题,请问可以麻烦您告知network.R中的proximity-class.a.csv,Rcode.class.factor.selection.R中的exp.class.csv和predict.data.csv分别对应了您的researchgate中SI. Experimental proteins identification.xlsx、SI.Model performance on selected individuals with tenfold validation.xlsx、SI.Experimental verification on selected individual proteins.xlsx中的哪一份文件吗?以及您给出的数据文件是运行之后的结果文件吗?
其余的已经在评论区找到相应回复啦,非常谢谢您的耐心解答,论文也给了我很大启发,再次感谢~
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