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3d-epti

Reconstruction codes for 3D-EPTI method

aspire

MRI phase combination algorithms for array-coils

automap

bold_sensitivity

clearswi.jl

improved susceptibility weighted imaging using multi-echo aquisitions

compilemri.jl

Compiled executables and compilation scripts for ROMEO, CLEAR-SWI and MCPC-3D-S

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

dicm2nii

DICOM to NIfTI conversion, NIfTI tools

epi_dc_tutorial

gadgetron

Gadgetron - Medical Image Reconstruction Framework

gadgetron-matlab

github-slideshow

A robot powered training repository :robot:

grappa-tutorial

A MATLAB-based tutorial on GRAPPA parallel imaging reconstruction for MRI

hmri-toolbox

A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)

ismrm2023_educational

ismrm_sunrise_matlab

Source code for the ISMRM Sunrise Recon Course

ismrmrd

ISMRM Raw Data Format

mp2rage

SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts

mpm_qsm-1

QSM pipeline for Multi Parametric Mapping acquisitions

mriresearchtools.jl

Specialized tools for MRI

musus-100_atlas

[Brain Structure & Function] Quantitative susceptibility atlas construction in Montreal Neurological Institute space: towards histological-consistent iron-rich deep brain nucleus subregion identification

nifti_tools

NIFTI tools for manipulating Nifty files with MATLAB.

nitorch

Neuroimaging in PyTorch

nordic_raw

Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising

publication-code

This repository contains code that accompanies publications from the FIL Physics Group

pulseq

Open source framework for pulse sequences

qsmnet

Source code for deep neural network trained quantitative susceptibility mapping (QSMnet and QSMnet+)

romeo.jl

fast 3D Phase Unwrapping

segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

sepia

Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)