baskadym / compilemri.jl

Compiled executables and compilation scripts for ROMEO, CLEAR-SWI and MCPC-3D-S

CompileMRI - mritools

Download executables for ROMEO, CLEAR-SWI and MCPC-3D-S (Linux and Windows)

Note for MacOS: We automatically compile for MacOS too, however, it seems to only run on the same version it was compiled on (macos-11). The MacOS executable are not signed and require the user to allow the execution of multiple files.

Compile ROMEO and CLEAR-SWI

1. Install Julia

   Please install Julia using the binaries from this page https://julialang.org. (Julia 1.7 or newer is recommended, some package managers install outdated versions)

2. Install CompileMRI

   Start Julia (Type julia in the command line or start the installed Julia executable)

   Type the following in the Julia REPL:

   julia> ] # Be sure to type the closing bracket via the keyboard
   # Enters the Julia package manager
   
   # optional: activate a local julia project in the current folder
   (@v1.7) pkg> activate . 
   
   (compile) pkg> dev https://github.com/korbinian90/CompileMRI.jl
   # All dependencies are installed automatically
   (compile) pkg> build CompileMRI

3. Create a command line executable

   julia> using CompileMRI
   julia> compile("/tmp/compiled")

   If the folder to output the binary (here /tmp/compiled) already exists, the additional keyword argument force=true is required:

   julia> compile("/tmp/compiled"; force=true)

Update to newest version

Since I'm using unregistered packages in dev mode, it is tricky to get updates to packages. Easiest is to remove the folder user/.julia/dev/CompileMRI and start over at step 2.

Known problems

Workaround for Permission Denied Error

ERROR: SystemError: opening file "/<path>/RomeoApp/<subfolder>/Project.toml"

If the compilation fails because of missing permissions, the RomeoApp folder needs write permission. In that case, changing the permission with

$ chmod 777 /<path>/RomeoApp/<subfolder>

and rerunning the command with

julia> compile("/tmp/compiled"; force=true)

should work.