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Brent McPherson's Projects

app-fs-suit-atlas icon app-fs-suit-atlas

Create a parcellation volume for network generation with a combination of Freesurfer and SUIT atlas labels.

app-snr_in_cc icon app-snr_in_cc

Brainlife.io app that computes the signal-to-noise ratio in the corpus callosum

dipy icon dipy

Diffusion MR Imaging in Python

encode icon encode

Method for encoding brain connectomes in multidimensional arrays (tensors).

fine icon fine

structural network analysis tool for dwi and tractography data in matlab

labelbuddy-annotations icon labelbuddy-annotations

Annotations of academic papers. The papers were likely gathered using pubget, and the annotations made with labelbuddy

life-1 icon life-1

MatLab routines for evaluating the quality of white-matter connectomes generated using diffusion-weighted imaging.

mba icon mba

Matlab Brain Anatomy. This is a set of routines for displaying and manipulating brain anatomy using MatLab.

mriqc icon mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

mrtools icon mrtools

mrTools - matlab based tools for fMRI

mrtrix3preproc icon mrtrix3preproc

mrtrix3preproc runs the mrTrix3 preprocessing pipeline in the diffussion data. It uses FSLs topup when the optional inverted phase encoding files are found, otherwise uses the eddy tool. It performs some other denoising steps, and it can normalize or align to acpc the data

narps_open_pipelines icon narps_open_pipelines

A codebase reproducing the 70 pipelines of the NARPS project (Botvinik-Nezer et al., 2020) shared as an open resource for the community.

pestillilab_projects icon pestillilab_projects

This repository contains code beign developed for a majority of the projects being undertaken by the Pestilli Research Group.

reviewer2go icon reviewer2go

A Montreal Brainhack 2023 Project - LLM Based Reviewer

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