bd2kgenomics Goto Github PK
Name: UC Santa Cruz Genomics Institute - Computational Genomics Lab
Type: Organization
Bio: Developers in the Computational Genomics Lab at the UC Santa Cruz Genomics Institute
Location: UC Santa Cruz
Name: UC Santa Cruz Genomics Institute - Computational Genomics Lab
Type: Organization
Bio: Developers in the Computational Genomics Lab at the UC Santa Cruz Genomics Institute
Location: UC Santa Cruz
creates a gene by cell matrix from multiple slices
Implementation of structural variant finding algorithm arriba by Sebastian Uhrig
Varscan copynumber variation caller workflow
Runs ADTEx and Varscan copynumber on input exome bam files
Runs STARFusion and arriba
Workflow for variant callers MuSE, MuTect, SomaticSniper, and Pindel
a place to track work on the GA4GH Dream Challenges
Scripts to find false tandem dups around scaffold gaps
Improve integration of FHIR Genomics and GA4GH
UCSC Treehouse Gene Fusion Analysis Pipeline
Providing a GA4GH Interface to Gemini Variant Data
Tracking for ga4gh-integration projects
End to end pipeline for calling variants against an entire genome
Tools and specifications for aligner behavior in the graph aligner bake-off
Tool to build a (Human) Genome Variation Map from a set of data sources
All code for reproducing reference graph bakeoff results
A stop-gap for hosting parasol binaries. If in doubt, ignore this.
Issues representing platform epics, user stories, tasks, etc. that are not specific to an existing component repository.
WAI-ARIA compliant React autosuggest component
React components for sorting, filtering and pagination of data.
A fast, parallel, streaming multipart uploader for S3
A common library for functions and tools used in toil-based pipelines
Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.
UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
Toil-based RNA-seq pipeline for processing single-cell data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.