Sugiyama layout can error on some (likely valid) input about bbop-js

[kltm]

Sadly, no file attachments for github :(

[kltm]

Can generate JS in go-mme by trying to use the wizard for:
"execution phase of apoptosis" over "goa_human".

[kltm]

David seems to have found another with the MME:

{"nodes": [{"id": "gomodel:mgi-5362b2ed0000016-GO-0072583-5362b2ed0000035"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0021923-5362b2ed0000025"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0021575-5362b2ed0000027"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0003674-5362b2ed0000023"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0061436-5362b2ed0000034"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0001889-5362b2ed0000041"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0007030-5362b2ed0000032"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0043588-5362b2ed0000040"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0048853-5362b2ed0000021"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0021869-5362b2ed0000022"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0048854-5362b2ed0000028"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-2000179-5362b2ed0000024"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0007029-5362b2ed0000042"}, {"id": "gomodel:mgi-5362b2ed0000016-GO-0009913-5362b2ed0000033"}], "edges": [{"sub": "gomodel:mgi-5362b2ed0000016-GO-0072583-5362b2ed0000035", "obj": "gomodel:mgi-5362b2ed0000016-GO-2000179-5362b2ed0000024", "pred": "RO:0002411"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0009913-5362b2ed0000033", "obj": "gomodel:mgi-5362b2ed0000016-GO-0061436-5362b2ed0000034", "pred": "BFO:0000050"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0021869-5362b2ed0000022", "obj": "gomodel:mgi-5362b2ed0000016-GO-0048853-5362b2ed0000021", "pred": "BFO:0000050"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0072583-5362b2ed0000035", "obj": "gomodel:mgi-5362b2ed0000016-GO-0009913-5362b2ed0000033", "pred": "RO:0002411"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-2000179-5362b2ed0000024", "obj": "gomodel:mgi-5362b2ed0000016-GO-0021923-5362b2ed0000025", "pred": "RO:0002213"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0021575-5362b2ed0000027", "obj": "gomodel:mgi-5362b2ed0000016-GO-0048854-5362b2ed0000028", "pred": "BFO:0000050"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0061436-5362b2ed0000034", "obj": "gomodel:mgi-5362b2ed0000016-GO-0043588-5362b2ed0000040", "pred": "BFO:0000050"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0021923-5362b2ed0000025", "obj": "gomodel:mgi-5362b2ed0000016-GO-0021575-5362b2ed0000027", "pred": "BFO:0000050"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-2000179-5362b2ed0000024", "obj": "gomodel:mgi-5362b2ed0000016-GO-0021869-5362b2ed0000022", "pred": "RO:0002213"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0048853-5362b2ed0000021", "obj": "gomodel:mgi-5362b2ed0000016-GO-0048854-5362b2ed0000028", "pred": "BFO:0000050"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0072583-5362b2ed0000035", "obj": "gomodel:mgi-5362b2ed0000016-GO-0007029-5362b2ed0000042", "pred": "RO:0002411"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0003674-5362b2ed0000023", "obj": "gomodel:mgi-5362b2ed0000016-GO-0072583-5362b2ed0000035", "pred": "BFO:0000050"}, {"sub": "gomodel:mgi-5362b2ed0000016-GO-0072583-5362b2ed0000035", "obj": "gomodel:mgi-5362b2ed0000016-GO-0007030-5362b2ed0000032", "pred": "RO:0002411"}]}

[kltm]

I'm wondering if this has to do with the single separate node away from the rest of the complicated graph? Perhaps causing an additional partition to be created without a corresponding edge partition?

[kltm]

Worked back to minimal test case!

     var bad = {
     "nodes":
     [
         {"id": "d"},
         {"id": "b"},
         {"id": "a"},
         {"id": "c"}
     ],
     "edges":
     [
         {"sub": "d",
          "obj": "c"},
         {"sub": "c",
          "obj": "a"},
         {"sub": "d",
          "obj": "b"}
     ]
     };

[kltm]

New case, remarkably like the old one:

var bad = {
    "nodes": [
    {"id": "d"},
    {"id": "e"},
    {"id": "b"},
    {"id": "a"},
    {"id": "c"}
    ],
    "edges": [
    {"sub": "d",
     "obj": "c"},
    {"sub": "c",
     "obj": "a"},
    {"sub": "e",
     "obj": "d"},
    {"sub": "d",
     "obj": "b"}
    ]
};