bgi-synbio / pymol-pub Goto Github PK

I have installed PyMOL-PUB on Ubuntu system by the following command: pip install PyMOL-PUB. However, I fail to know how to lanuch PyMOL-PUB.

dell@dell-OptiPlex-Tower-Plus-7010:~/Desktop$ pip install PyMOL-PUB
Defaulting to user installation because normal site-packages is not writeable
Collecting PyMOL-PUB
Downloading PyMOL_PUB-1.2-py3-none-any.whl (54 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.5/54.5 KB 489.5 kB/s eta 0:00:00
Requirement already satisfied: pillow in /usr/lib/python3/dist-packages (from PyMOL-PUB) (9.0.1)
Collecting matplotlib
Downloading matplotlib-3.8.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.6/11.6 MB 11.4 MB/s eta 0:00:00
Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (from PyMOL-PUB) (1.21.5)
Requirement already satisfied: pymol in /usr/lib/python3/dist-packages (from PyMOL-PUB) (2.5.0)
Collecting biopython
Downloading biopython-1.83-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 10.7 MB/s eta 0:00:00
Collecting cycler>=0.10
Downloading cycler-0.12.1-py3-none-any.whl (8.3 kB)
Collecting packaging>=20.0
Downloading packaging-24.0-py3-none-any.whl (53 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 53.5/53.5 KB 5.3 MB/s eta 0:00:00
Collecting fonttools>=4.22.0
Downloading fonttools-4.50.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 11.3 MB/s eta 0:00:00
Requirement already satisfied: python-dateutil>=2.7 in /usr/lib/python3/dist-packages (from matplotlib->PyMOL-PUB) (2.8.1)
Collecting contourpy>=1.0.1
Downloading contourpy-1.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (310 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 310.7/310.7 KB 10.1 MB/s eta 0:00:00
Collecting kiwisolver>=1.3.1
Downloading kiwisolver-1.4.5-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 11.2 MB/s eta 0:00:00
Requirement already satisfied: pyparsing>=2.3.1 in /usr/lib/python3/dist-packages (from matplotlib->PyMOL-PUB) (2.4.7)
Installing collected packages: packaging, kiwisolver, fonttools, cycler, contourpy, biopython, matplotlib, PyMOL-PUB
Successfully installed PyMOL-PUB-1.2 biopython-1.83 contourpy-1.2.0 cycler-0.12.1 fonttools-4.50.0 kiwisolver-1.4.5 matplotlib-3.8.3 packaging-24.0

`Adding PyMOL-PUB 1.1 to easy-install.pth file

Processing dependencies for PyMOL-PUB==1.1
Searching for pymol
Reading https://pypi.org/simple/pymol/
No local packages or working download links found for pymol
error: Could not find suitable distribution for Requirement.parse('pymol')`

I tried installing the package after installing PyMOL v 2.5.0