bglarkin / tallgrass_restoration_legacies Goto Github PK

Remember to do the final diagnostics (which you should have done to start with!)

• Plot sequence abundance vs richness. Whatever the outcome, you may have to explain it if there is a relationship. The lines may look different among field types
• Produce rarefaction curves for each site. Look for outliers or obvious evidence that we have significantly undersampled. Do this with the set of 6 samples per field, and/or with all the samples we have.

It's a poor name. How about ETL?

Remember to produce this plot and test in the microbial communities script. It isn't a constrained anaylsis; those will be done later with environmental variables. But this is a quick way to get a naive test on years since restoration, and it's likely to be significant with all microbial datasets.

"Blob is taking too long to generate." This might be because I've added too much inline code?

Now for some reason one of the remnants is NA. I need to re-run all the code and troubleshoot. This is endless.