Name: Benjamin M. Gyori
Type: User
Company: Northeastern University
Bio: Sysbio & AI researcher. Leading https://gyorilab.github.io. Working on knowledge assembly, modeling, human-machine collaboration, and text mining.
Twitter: benjamingyori
Location: Boston, MA, USA
Blog: https://gyorilab.github.io
Benjamin M. Gyori's Projects
Client library to access NDEx servers from Python
NDEx2 Client v1.0
Networkx with neo4j back-end
Official NetworkX source code repository.
NLM .nxml to text format conversion
OpenComet comet assay image analysis
Natural language implementation of the Mechanistic Pan-Cancer Model from the Birtwistle Lab: https://github.com/birtwistlelab/Mechanistic_Pan-Cancer_Model
Path property language, path checking and hypothesis testing
A graphical representation of ensembles of paths in directed networks.
Code to generate figures for paths graph paper.
Map amino acid sites of post-translational modifications from models or data to reference positions.
Code to generate results and figures relevant to the ProtMapper manuscript.
A pure Python package for parsing, validating, and converting networks encoded in Biological Expression Language (BEL)
A PyBEL extension for analyzing BEL graphs
Access Java classes from Python
Python interface to the Kami knowledge representation for biochemical models.
KQML messaging library
A programmatic interface for generating and handling OBO in Python.
Python framework for Systems Biology modeling
Reach Biomedical Information Extraction
Service that interfaces to the Reach parser at UAZ
Edit files directly from S3 with your default editor
An exploration into creating an INDRA agent for the Sbgnviz-Collaborative-Editor
Updated versions of the Selventa Small and Large Corpus