bienseo / motionextraction

Extracts motion parameters from fMRI dicom images

motion_extract.py

2014-09-03

This code is for CCNC MRI raw data structure, obtained from Siemens Trio 3.0T MRI machine.

It moves all modality dicoms under a directory called 'dicom'. Then only the T1, REST, DTI, DKI modalities are converted to nifti format into new directories.

• For the REST modality, the subject motion is also documented into a graph using Afni.

###External dependencies AFNI matplotlib -pyplot (motion_extraction) pandas (motion_extraction) pp (motion_extraction)

###usage:

motionExtraction.py [-h] [-dir DIRECTORY]

eg) motionExtraction.py --dir /Users/kevin/NOR04_CKI