sparta_linux's Introduction
Welcome to SPARTA! SPARTA is a Simple Program for Automated reference-based, bacterial RNA-seq Transcriptome Analysis. Please go to sparta.readthedocs.org for the tutorial.
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sparta_linux's Issues
Output read mapping files with normalized expression values
logCPM
Support for other sequencing platforms as input
Add support for SAM, BAM, FASTA, etc. as input files
Paired end support for SPARTA
Add paired-end read support for SPARTA and the addition to use Bowtie or Bowtie2 with the software.
Operon and UTR analysis
ECCN number of the software Sparta- all version
Hi Team,
Greetings!
My name is Kriti Bhatnagar and I am a Software Analyst in ExxonMobil Corporation. My group, Software Asset Management, is responsible for software licensing in our organization
Could you please provide us the ECCN number of the software Sparta all version
ECCN – Export Control Classification Number
If you do not have your software classified with an ECCN, please kindly answer the following questions so that we may self-assess:
| NO | YES | |
|---|---|---|
| Does the Software perform any encryption or utilize any encryption processes? | ||
| If the answer is YES to the above, please indicate if the encryption is coded into the application or separately called (such as using SSL) | ||
| If the answer is YES to the above, please indicate what function(s) the cryptography/encryption serves | ||
| A, Copyright protection purposes (Includes using a license key/code) | ||
| B, User authentication purposes | ||
| C, A core part of the functionality such as to encrypt databases D, To encrypt communications between the software and a host system |
Background information
An Export Control Classification Number (ECCN) is a specific alpha-numeric code that identifies the level of export control for items e.g. software that are exported from member states of the Wassenaar Arrangement, including the United States. After obtaining the ECCN, the exporter must determine whether an export license is required to export items to certain countries
Regards,
Kriti Bhatnagar
Software analyst
New Products & Complex Team
EMIT | IT OPS | CES | WDS | SAM
HCL Technologies Limited
(CIN: L74140DL1991PLC046369)
10th Floor, ODC-IV, Software Tower 6, Sector 126
Noida SEZ, Uttar Pradesh – 201301, India
Phone: +1-4088093746 (ext.4144395)
Email:- [email protected]
for
ExxonMobil Global Services Company
22777 Springwoods Village Parkway
Spring, TX 77389
United States of America
Modularize each step of the workflow or allow for full run
Make each analysis step modular if desired but still have the default for running the full analysis.
Automate batch effect correction
Automate the batch effect correction process and include the Pearson correlation step for replicate correlation information.
Non-reference based analysis
de novo transcriptome assembly and analysis
Need to either make install into user homedir, or allow for other flavors of linux
install script uses
sudo apt-get
requiring:
1)Debian based OS
2) sudo access
should be able to use pip and R commands to install into local directory for all dependencies (other than python-devel)
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