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A cookiecutter template for creating a new BioIO file format reader plugin.

License: BSD 3-Clause "New" or "Revised" License

Python 79.52% Just 20.48%

cookiecutter-bioio-reader's People

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brianwhitneyai avatar dependabot[bot] avatar evamaxfield avatar seanleroy avatar

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cookiecutter-bioio-reader's Issues

bug/python versioning formatting

Commit e95d495 removed quotations from python 3.10. We assumed that this was not necessary but needs to be in-place for the trailing zero. When creating the ND2 and LIF readers this became apparent.

Fix CI

Seems like some formatting errors in the cookiecutter, simple fix hopefully

Update dependencies / CI / CD

Feature Description

(Largely a placeholder/reminder) Update anything that isn't as up to date as it could be including best practice stuff.

cookiecutter notes

  • remove data_dir fixture, possibly delete conftest altogether
  • remove python 3.8 support
  • add python 3.11 support?

Declare file extension support

Feature Description

Either in the cookiecutter or somewhere visible we'll need to make sure that plug-ins specify which file formats they support. Specifically they will need to mention which file extensions they are intended to support (should wildcards be allowed like for bioformats?).

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