biomedbigdata Goto Github PK

16s-rrna-gene-functional_benchmark_profiling

analysis_of_circrna_sponges

Pipeline for the systematic analysis of circRNAs that act as miRNA sponges

asimulator

ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142

bicon

Network Constrained Biclustering PyPI package

bicon-web

Network Constrained Biclustering (BiCoN) web platform

bicon_tutorial

bigants-pypi-package

biomedbigdata.github.io

caddie-backend

caddie-frontend

caddiepy

The python package to the Cancer Driver Drug Interaction Explorer (CADDIE)

circest-downstream

circrna-detection

Scripts, documentation and results for the Bachelor Thesis "Analysis of Circular RNAs As miRNA Sponges".

circrna-sponging

comp-sys-med-course

Bioinformatics course for PhD students with background in molecular biology and basic knowledge of R. The aim is to learn and apply principles of differential gene expression analysis and machine learning

cyanus

A Systematic Comparison of Differential Analysis Methods for CyTOF Data & CYANUS App

cyanus-paper-code

Code associated with the paper "A systematic comparison of novel and existing differential analysis methods for CyTOF data", more specifically, the data generation and the DE methdos comparison

cyanus_functions

cyemd_package

CyEMD: A differential analysis method developed for CyTOF data

data-leakage-ppi-prediction

Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'

deepblue-middleware

deepbluer

digger

Fork for developing Digger 2.0

dimmer

dive

dive-deploy

Dive's deployment files

docker-hts-platform

A docker-compose configuration to build an HTS platform with OpenLabFramework, SAVANAH, MIRACLE, HiTSeekR and KeyPathwayMinerWeb all readily configured, interlinked and supported by service images.

drp_model_suite

dysregnet

dysregnet_package

Inferring patient-specific regulatory alterations