A multisample wdl-template.
The structure:
- A pipeline that executes jobs over all samples and starts the scatters per:
- Sample. executes jobs per sample and starts the scatters per:
- library. Executes jobs per library and starts the scaters per:
- readgroup. Executes jobs per readgroup.
- library. Executes jobs per library and starts the scaters per:
- Sample. executes jobs per sample and starts the scatters per:
Then there is sampleConfig.wdl. This determines hoe samples libraries and readgroups are related by a samples.yml file.