bmbroom / rstudio-ngchm Goto Github PK
View Code? Open in Web Editor NEWrstudio with preinstalled NGCHM R library
License: GNU General Public License v2.0
rstudio with preinstalled NGCHM R library
License: GNU General Public License v2.0
Hi, Is the chmViewer() command still working? I can't open the viewer using this command.
Hi,
I am getting this error while trying to run NGCHM!
Here's the console output :
INFO [2020-09-24 14:41:12] Creating NGCHM as infercnv.ngchm
INFO [2020-09-24 14:41:12] Initializing new NGCHM InferCNV Object.
INFO [2020-09-24 14:44:53] Saving new NGCHM object
Thu Sep 24 02:44:54 PM 2020 PROGRESS :Writing specification: 50 creating specification directory
Thu Sep 24 02:44:54 PM 2020 PROGRESS :Writing specification: 80 writing extra support files
Sep 24, 2020 2:44:56 PM org.apache.pdfbox.pdmodel.font.PDType1Font
WARNING: Using fallback font LiberationSans for base font Symbol
Sep 24, 2020 2:44:56 PM org.apache.pdfbox.pdmodel.font.PDType1Font
WARNING: Using fallback font LiberationSans for base font ZapfDingbats
Warning: No heat map description provided in properties : chm.info.caption.
Warning: Column label type (axisTypes where = col or both) not specified. Will use generic linkouts menu
Warning: Row label type (axisTypes where = row or both) not specified. Will use generic linkouts menu
START Data Generator Heat Map Generation: Thu Sep 24 14:45:01 KST 2020
Exception in thread "main" java.awt.AWTError: Can't connect to X11 window server using ':0' as the value of the DISPLAY variable.
at sun.awt.X11GraphicsEnvironment.initDisplay(Native Method)
at sun.awt.X11GraphicsEnvironment.access$200(X11GraphicsEnvironment.java:65)
at sun.awt.X11GraphicsEnvironment$1.run(X11GraphicsEnvironment.java:115)
at java.security.AccessController.doPrivileged(Native Method)
at sun.awt.X11GraphicsEnvironment.(X11GraphicsEnvironment.java:74)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at java.awt.GraphicsEnvironment.createGE(GraphicsEnvironment.java:103)
at java.awt.GraphicsEnvironment.getLocalGraphicsEnvironment(GraphicsEnvironment.java:82)
at java.awt.image.BufferedImage.createGraphics(BufferedImage.java:1181)
at mda.ngchm.datagenerator.HeatmapDataGenerator.buildTnThumbnail(Unknown Source)
at mda.ngchm.datagenerator.HeatmapDataGenerator.processHeatMap(Unknown Source)
at mda.ngchm.datagenerator.ShaidyRMapGen.main(Unknown Source)
Error in NGCHM::chmExportToFile(hm, file_path, overwrite = TRUE, shaidyMapGen = path_to_shaidyMapGen) :
export to ngchm failed
I saw in some other comments that this could be a Java version problem, and could be taken care of by installing the right version - 1.8. Unfortunately, I've checked for the Java version and it seems to be correct, so what else do you think could be wrong?
Thanks.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.