The whole project can not be public, but here are some basic templates and sometimes they can be used for convenience.
For HurricaneReport :
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create a HurricaneReport.jar with external libraries included in Eclipse.
a. Right mouse on project -> Export -> Runnable jar
b. Choose Launch conifg and export destination
c. click-Package required libraries into generate JAR
d. click-finish
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HurricaneReport.jar : direct to the path for the HurricaneReport.jar java -jar HurricaneReport.jar
For HurricaneReport-DB :
- java -jar reportDb.jar init /Users/air/Desktop/data.txt
- java -jar reportDb.jar create /Users/air/Desktop
For UpdateFromNCBI : set arguments before run to avoid java heap space not enough: -Xms2048m -Xmx4096m