$ wot optimal_transport_validation --matrix matrix.txt --cell_days days.txt --covariate covariate.txt
local_pca set to 30, above gene count of 7. Disabling PCA
Traceback (most recent call last):
File "/home/yeroslaviz/miniconda3/envs/wot1.0/lib/python3.7/site-packages/pandas/core/indexes/base.py", line 2657, in get_loc
return self._engine.get_loc(key)
File "pandas/_libs/index.pyx", line 108, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/index.pyx", line 132, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/hashtable_class_helper.pxi", line 1601, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas/_libs/hashtable_class_helper.pxi", line 1608, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'full'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/yeroslaviz/miniconda3/envs/wot1.0/bin/wot", line 11, in <module>
load_entry_point('wot', 'console_scripts', 'wot')()
File "/home/yeroslaviz/projects/AnnB/TestingEnv/wot1.0.0/wot/wot/__main__.py", line 21, in main
cmd.main(command_args)
File "/home/yeroslaviz/projects/AnnB/TestingEnv/wot1.0.0/wot/wot/commands/optimal_transport_validation.py", line 73, in main
summary_stats = summary[summary['full'] == False]
File "/home/yeroslaviz/miniconda3/envs/wot1.0/lib/python3.7/site-packages/pandas/core/frame.py", line 2927, in __getitem__
indexer = self.columns.get_loc(key)
File "/home/yeroslaviz/miniconda3/envs/wot1.0/lib/python3.7/site-packages/pandas/core/indexes/base.py", line 2659, in get_loc
return self._engine.get_loc(self._maybe_cast_indexer(key))
File "pandas/_libs/index.pyx", line 108, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/index.pyx", line 132, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/hashtable_class_helper.pxi", line 1601, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas/_libs/hashtable_class_helper.pxi", line 1608, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'full'