bumstema / morphologies

Generate condensed planar distributions of arbitrary shaped 2d particles using Monte Carlo steric interactions

morphologies

Generate condensed planar distributions of arbitrary shaped 2d particles using Monte Carlo steric interactions.

Example simulation of two ellipse, with one (blue) having thin hair-like pretursions on its surface. Hexagonal periodic boundary conditions.

Written as part of PhD thesis: Simulating Self-Assembly of Organic Molecules & Classifying Intermolecular Dispersion

Use >make while in "1_compile" to create the executable files for your computer. They will be put in folder: "2_run". Note: requires "Boost" c-library to be installed.

Set up the simulation details within the files inside folder: "2_run". Link the polygons files you wish to simulate using their system paths in "3_data". Submit batches of multiple simulations to run on machines using sqsub with batch_submit.sh.

Simulation final configurations will be placed into the folder: "3_data/data".

Examples of analysing the planar distributions can be seen with tools found in "4_analyse".