c-bun / ocbe-textbook

Organic Chemistry with a Biological Emphasis by Tim Soderberg

OCBE-Textbook

Organic Chemistry with a Biological Emphasis by Tim Soderberg

This is a living textbook version of Tim Soderberg's excellent "Organic Chemistry with a Biological Emphasis". The book is hosted as a GitHub Pages webpage and can be viewed via the link below.

Access the textbook here

Students in Chem 241 and 242 at Dickinson College will be working to contribute to the textbook! Changes and additions will be tracked via Issues and Pull Requests. If you find an error in the book or would like to submit a change, please follow the guide here. Happy reading!

ocbe-textbook's Issues

Issue on page /OCBE_I/Chapter 1 - Introduction to organic structure and bonding, part I.html

The text on the figure is doubled on itself, and needs to be fixed

Issue on page /Introduction.html

Chapter 15.1 figure 5, it does not have a figure number, but its the fifth figure on the page. It should say "Oxidizing Agent", and "Reducing Agent" at the top of both examples (the label). And it should say "Cr lost a bond to oxygen" and the second part should say "boron lost a bond to hydrogen, gained a bond to Oxygen"

Issue on page /Solutions/Solutions to in-chapter problems.html

E9.7 fixed figure. The line for the bond break was in the wrong place, should be on left side of beta phosphate.
Figure Correction .txt

Issue on page /OCBE_II/Chapter 12 - Reactions at the ⍺-carbon, part I.html

fig 26a Chapter 12 text overlap fixed
fig 26a.txt

Issue on page /OCBE_II/Chapter 16 - Free radical reactions.html

Fig 2 fixed text overlap.
figure 2.txt

Issue on page /OCBE_II/Chapter 13 - Reactions at the ⍺-carbon, part II.html

Fixed issue with the color-coding of 13.3A: Claisen Condensation's fig 31, specifically the middle molecules C and Nu.

Issue on page/OCBE_II/Chapter 14 figure 1b(fixed text that was cut off)

Chapter 14 intro figure 1b Untitled ACS Document 1996-1 copy 4.txt

Issue on page /OCBE_II/Chapter 17 - Coenzymes.html- figure 4 page

Text overlap and transamination word is not complete. Figure 4 chapter 17

Fig 4 chapter 17.txt

Issue on page /OCBE_II/Chapter 11 - Nucleophilic acyl substitution reactions.html

figure15 fixed text overlap.
fig15.txt

Issue on page /Chapter 9 - Phosphate Transfer Reactions.html

This is a test issue. Fix it!!

Transimination Mechanism Page 79

Transimination Mechanism page 79
Transimination mech.txt

Issue on page/OCBE_II/Chapter 14-The regiochemistry of electrophilic addition .html

figure 6 fixed overlapping text and cut off text
Untitled ACS Document 1996-6 ch 14 fig 6.txt

Issue on page /OCBE_II/Chapter 9 - Phosphate Transfer Reactions.html

For 9.7 Figure 41 the text was cut off
9.7 Figure 41.txt

Issue on page /Introduction.html

Transimination reaction on page 79
Transimination.txt

Issue on page /Solutions/Solutions to in-chapter problems.html

Solutions to In-Chapter Exercises E14.9 a) figure fixed from OCH3 to OCH2CH3 for E1 substitution product.
Solutions to In-Chapter Exercises E14.9 a).txt

Issue on page /OCBE_II/Chapter 17 - Coenzymes.html

chapter 17 figure 10, text was cut off
Chapter 17 Figure 10.txt

Chapter 11

Issue on page /OCBE_II/Chapter 16 - Free radical reactions.html

Figure 27 Section 16.6 Flavin as a single electron carrier - fixed figure (structure 2 was missing arrows on top blue H, arrow from base to H and arrow from the NH bond to N)

fig 27 Section 16.6- Flavin as a a single-electron carrier copy.txt

Issue on page /OCBE_I/fig 15 Chapter 11.4 - acyl phosphates.html

text overlap issue
Textbook correction figure 15 chapter 11.4.txt

Issue on page /OCBE_II/Chapter 17 - Coenzymes.html

Figure 60 Chapter 17 text overlap fixed.
fig 60.txt

Issue on page /OCBE_II/Chapter 11 - Nucleophilic acyl substitution reactions.html

fixed text overlap on fig 11
revision 1.txt

Issue on page /OCBE_II/Chapter 11 - Nucleophilic acyl substitution reactions.html

Fixed text overlap on Figure 35.
Figure35.txt

Issue on page /OCBE_II/Chapter 16 - Free radical reactions.html

Fig 1a chapter 16 -text overlap "spontaneous tautomerization" and [FADH2] instead of (FADH]

fig 1a ch 16 copy.txt

Issue on page /OCBE_II/Chapter 11 - Nucleophilic acyl substitution reactions.html

Fig37 fixed text overlap
fig37.txt

Issue on page /OCBE_II/Chapter 16 - Free radical reactions.html

Fig 3 fixed text overlap.
figure 3.txt

Issue on page /OCBE_I/Chapter 1 - Introduction to organic structure and bonding, part I.html

Figure 22 fixed text overlap.
fig22.txt

Issue on page /OCBE_I/Chapter 3 - Conformation and stereochemistry.html

There is a text overlay in Chapter 3 Figure 1b.

Chapter 17 Figure 37

Chapter 17 Figure 37.txt

Cut off text on figure 37

Chapter 7 Figure 31

Your issue content here.
Chapter 7 Figure 31 copy.txt

Text cut off on figure

Issue on page /OCBE_II/Chapter 17 - Coenzymes.html

chapter 17 fig 6. text was cut off
Chapter 17 Figure 6 PLP-dependent amino acid racemization.txt

Issue on page /OCBE_II/Chapter 15 - Oxidation and reduction reactions.html

chapter 15 #2 corrected cut text in the figure
Chapter.17.Figure.6.PLP-dependent.amino.acid.racemization.txt

Issue on page /OCBE_II/Chapter 14 - Electrophilic reactions.html

fig 20a fixed text overlap
fig 20a.txt

Issue on page/ OCBE_II/Chapter 15-Oxidation and Reduction in the Context of Metabolism

figure 9 fixed overlapping text and cut off text
Untitled ACS Document 1996-7 fig 9.txt

Issue on page /OCBE_II/Chapter 9 - Phosphate Transfer Reactions.html

fig3 fixed text overlap.
fig3.txt

Issue on page /OCBE_I/Chapter 1 - Introduction to organic structure and bonding, part I.html

Fixed Figure 2a text overlap
Chem Figure Correction #2.txt

Issue on page /OCBE_I/Chapter 14 - 14.1 electrophilic addition fig3.html

text overlap issue
textbook corrections figure 3 section 14.1.txt

Issue on page /OCBE_II/Chapter 9 - Phosphate Transfer Reactions.html

Exercise 9.10 Edited product that had extra hydrogen in the product. There should be a negative charge on the oxygen atom instead of hydrogen.
Edition on exercise Ch 9.10.txt

Issue on page /OCBE_I/Chapter 5 - Structure determination, part II - Nuclear magnetic resonance spectroscopy.html

fig 25 Chapter 5 text overlap fixed
fig 25.txt

Issue on page /OCBE_I/Chapter 3 - Conformation and stereochemistry.html

There is a text overlap of A and is.

Issue on page /OCBE_II/Chapter 9 - Phosphate Transfer Reactions.html

Your issue content here. In exercise 9.10, the product in the reaction has one extra hydrogen. There should be a negative charge there instead of hydrogen.
Edition on excercise Ch 9.10.txt