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Bioinformatic cis-motif-, H3K27me3 correlation- and GO-analysis conducted for my master's thesis

R 45.13% Shell 54.87%
motif-analysis motif-enrichment-analysis

towards_epigenetic_signature_of_ry_and_telobox_related_cis-motifs's Introduction

Towards epigenetic signature of RY and Telobox related cis-motifs

Welcome,

here you can find the more detailed description on the code I used for my master's thesis.

Workflow:

  1. Data Download & Blacklists

These two scripts can be run in parallel:

  1. Cis-motif Annotation OR
  2. Chromatin data preparation

This script can be used after the first three scripts have run.

  1. Motif distribution in H3K27me3+ and H3K27me3- genes

Next comes the GAT Analysis with 6 run in R.

  1. GAT-Annotation
  2. GAT-Analysis
  3. GAT-Visualization

In the end comes the GO-Analysis with 8 and 9 run in R.

  1. GO-Preparation
  2. TopGO-Analysis
  3. GO visualization

towards_epigenetic_signature_of_ry_and_telobox_related_cis-motifs's People

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